[FCA] Ovary (10x, Stringent)

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Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

qxj5ei

Project Name

[FCA] Ovary (10x, Stringent)

TypeUnknown

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedApr 19, 2026

Reproducibility

Instructions List of commands

Input file

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
20	stretch follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
19	stalk follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
15	polar follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
14	oviduct	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
13	ovarian sheath muscle	SCope manual	Mlp84B bam Mlc2 Mhc Cp18 Cp38 nos Act57B Vm26Ab Vm26Aa vas Mlp60A	-	+3 / -0	bbcf.epfl	May 30, 2022
8	escort cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
7	dorsal appendage forming follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
21	young germ cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
18	posterior terminal follicle cell ca. St. 5-8	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
17	post-mitotic germ cell early 16-cell cyst	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
16	post-mitotic endocycling nurse cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
12	main body follicle cell ca. until St. 5	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
11	germline cell, unknown stage	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
10	germ cell stage 4 and later	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
9	follicle stem cell and prefollicle cell	SCope manual	eya cas sick Wnt4	-	+1 / -0	bbcf.epfl	May 26, 2022
6	choriogenic main body follicle cell and corpus luteum	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
5	choriogenic main body follicle cell St. 14	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
4	choriogenic main body follicle cell St. 12	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
3	central main body follicle cell ca. St. 6-8	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
2	artefact	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
1	adult tracheal cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
0	16-cell germline cyst in germarium region 2a and 2b	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022

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Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Ovary (10x, Stringent) ASAP55 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details