Gut (Hung 2019, 10x) ASAP1 v4

2,201 cells D. melanogaster

Gene filtering #1 HVG [scanpy]

Success
2020-01-27 14:15 Wait 0:04 Run 0:10 Idle 0 Max. RAM 283GB bbcf.epfl@gmail.com

Filtering summary

Genes: 1246
Cells: 2197

Warnings

Some gene indices fell into a single bin: their normalized dispersion was set to 1. Decreasing `n_bins` will likely avoid this effect.

Parameters
input_matrix:matrixn_bins:20n_top_genes:Noneis_logged:falsemin_disp:0.5max_disp:Infmin_mean:0.0125max_mean:3
Command
time -o '/data/asap2/users/1/wkqvt9/gene_filtering/11618/exec_run_details.log' -f 'U=%U,S=%S,E=%E,P=%P,X=%X,D=%D,M=%M,K=%K,t=%t,I=%I,O=%O,F=%F,R=%R,W=%W'  python3 hvg_scanpy_opti.py  /data/asap2/users/1/wkqvt9/cell_filtering/11617/output.loom /matrix /data/asap2/users/1/wkqvt9/gene_filtering/11618 0.5 0.0125 3 Inf 20 None false 1> /data/asap2/users/1/wkqvt9/gene_filtering/11618/exec.out 2> /data/asap2/users/1/wkqvt9/gene_filtering/11618/exec.err

Partial 'plotly_plot2' not found

Partial 'plotly_plot2' not found