[FCA] Head (10x, Stringent)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

icmuj3

Project Name

[FCA] Head (10x, Stringent)

TypeUnknown

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMay 05, 2026

Views13'418

Reproducibility

Instructions List of commands

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
80	transmedullary neuron Tm9	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
79	transmedullary neuron Tm5c	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
78	transmedullary neuron Tm4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
77	transmedullary neuron Tm3a	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
76	transmedullary neuron Tm29	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
75	transmedullary neuron Tm20	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
74	transmedullary neuron Tm2	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
73	transmedullary neuron Tm1	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
72	transmedullary Y neuron TmY8	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
71	transmedullary Y neuron TmY5a	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
70	transmedullary Y neuron TmY4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
69	transmedullary Y neuron TmY14	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
68	subperineurial glial cell	SCope manual	Mhc	-	+1 / -0	bbcf.epfl	May 30, 2022
67	skeletal muscle of head	SCope manual	Mhc Tret1-1 apt daw repo	-	+3 / -0	bbcf.epfl	May 30, 2022
66	proximal medullary amacrine neuron Pm4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
65	proximal medullary amacrine neuron Pm2	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
64	pigment cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
62	photoreceptor cell R8	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
61	photoreceptor cell R7	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
60	perineurial glial sheath	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
59	pericerebral adult fat mass	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
58	outer photoreceptor cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
57	optic-lobe-associated cortex glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
56	olfactory receptor neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
54	ocellus retinula cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
53	medullary intrinsic neuron Mi9	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
52	medullary intrinsic neuron Mi4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
51	medullary intrinsic neuron Mi15	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
50	medullary intrinsic neuron Mi1	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
49	lobula columnar neuron LC17	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
48	lobula columnar neuron LC12	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
47	lobula columnar neuron LC10	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
46	lamina wide-field 2 neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
45	lamina wide-field 1 neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
44	lamina monopolar neuron L5	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
43	lamina monopolar neuron L4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
42	lamina monopolar neuron L3	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
41	lamina monopolar neuron L2	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
40	lamina monopolar neuron L1	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
38	hemocyte	SCope manual	Hml	-	+2 / -0	bbcf.epfl	May 30, 2022
37	gamma Kenyon cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
36	epithelial cell	SCope manual	Mhc grh	-	+1 / -0	bbcf.epfl	May 30, 2022
35	ensheathing glial cell	SCope manual	Hml	-	+2 / -0	bbcf.epfl	May 30, 2022
34	dorsal rim area	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
33	dopaminergic neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
32	dopaminergic PAM neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
31	distal medullary amacrine neuron Dm9	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
30	distal medullary amacrine neuron Dm8	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
29	distal medullary amacrine neuron Dm3	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
28	distal medullary amacrine neuron Dm12	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
27	distal medullary amacrine neuron Dm11	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
26	distal medullary amacrine neuron Dm10	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
25	cone cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
24	columnar neuron T1	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
23	centrifugal neuron C3	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
22	centrifugal neuron C2	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
21	auditory sensory neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
19	antennal trichoid sensillum at4	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
18	antennal lobe projection neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
17	alpha/beta Kenyon cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
16	alpha'/beta' Kenyon cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
14	adult optic chiasma glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
13	adult olfactory receptor neuron Gr21a/63a	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
11	adult fat body	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
10	adult brain perineurial glial cell	SCope manual	Vmat CG4797 repo Indy	-	+1 / -0	bbcf.epfl	May 30, 2022
9	adult brain cell body glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
5	T neuron T3	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
4	T neuron T2a	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
3	T neuron T2	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
1	Kenyon cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
0	Johnston organ neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
63	photoreceptor-like	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
55	octopaminergic/tyraminergic neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
39	lamina intrinsic amacrine neuron Lai	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
15	adult reticular neuropil associated glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
12	adult lamina epithelial/marginal glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
8	T neuron T4/T5c-d	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
7	T neuron T4/T5a-b	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
6	T neuron T4/T5	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
2	Poxn neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
20	artefact	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Includes annotations from every project you can read that shares this cell set.

Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Head (10x, Stringent) ASAP49 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details