[{"name":"cell_filtering/24764/output.loom","file_size":"215MB","run_name":"Cell filtering #1","run_attrs":"\u003cdiv class='flex flex-wrap gap-1.5 items-center'\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"depth\" data-run-param-info-label-value=\"Depth\" data-run-param-info-description-value=\"Minimum depth\" data-run-param-info-value-value=\"100\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDepth:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e100\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"detected_genes\" data-run-param-info-label-value=\"Detected genes\" data-run-param-info-description-value=\"Minimum number of detected genes\" data-run-param-info-value-value=\"100\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDetected genes:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e100\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"protein_coding_content\" data-run-param-info-label-value=\"Protein coding content\" data-run-param-info-description-value=\"Minimum percentage of protein-coding genes\" data-run-param-info-value-value=\"80\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eProtein coding content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e80\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"mito_content\" data-run-param-info-label-value=\"Mito content\" data-run-param-info-description-value=\"Minimum percentage of mitochondrial genes\" data-run-param-info-value-value=\"40\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eMito content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e40\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"ribo_content\" data-run-param-info-label-value=\"Ribo content\" data-run-param-info-description-value=\"Minimum percentage of ribosomal genes\" data-run-param-info-value-value=\"40\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eRibo content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e40\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"manually_discarded_cols\" data-run-param-info-label-value=\"Manually discarded cols\" data-run-param-info-description-value=\"Manually discarded cells\" data-run-param-info-value-value=\"965e724ec0956583bdd72685130bac36a900d9171195579fe233253a3ce1575f\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eManually discarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e965e724ec0956583bdd72685130bac36a900d9171195579fe233253a3ce1575f\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"nber_manually_discarded_cols\" data-run-param-info-label-value=\"Nber manually discarded cols\" data-run-param-info-description-value=\"Number of manually discarded cells\" data-run-param-info-value-value=\"0\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eNber manually discarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e0\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"discarded_cols\" data-run-param-info-label-value=\"Discarded cols\" data-run-param-info-description-value=\"Discarded cells\" data-run-param-info-value-value=\"d9da6e9b0c836df5f3675ab556a240d16dab69c7292be0782ff6a3750336edba\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDiscarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003ed9da6e9b0c836df5f3675ab556a240d16dab69c7292be0782ff6a3750336edba\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-blue-100 text-blue-700 border-blue-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"input_matrix\" data-run-param-info-label-value=\"Input matrix\" data-run-param-info-description-value=\"\" data-run-param-info-value-value=\"/matrix\" data-run-param-info-pipeline-run-id-value=\"24758\" data-run-param-info-pipeline-url-value=\"/projects/dprlat/pipeline_runs\"\u003e\u003cspan class='font-semibold text-blue-800'\u003eInput matrix:\u003c/span\u003e\u003cspan class='text-blue-600'\u003ematrix\u003c/span\u003e\u003c/span\u003e\u003c/div\u003e","nber_cols":33028,"nber_rows":58347,"url":"https://asap.epfl.ch/projects/dprlat/get_file?filename=cell_filtering%2F24764%2Foutput.loom","url_h5ad":"https://asap.epfl.ch/projects/dprlat/get_file?filename=cell_filtering%2F24764%2Foutput.h5ad","content":[{"name":"/row_attrs/_Biotypes","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/specimen_from_organism.organ.ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/_Chromosomes","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/library_preparation_protocol.strand","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/_StableID","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_Sum","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/matrix","nber_cols":33028,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_StableID","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/CellID","nber_cols":33028,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/col_attrs/_Depth","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Detected_Genes","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Protein_Coding_Content","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Ribosomal_Content","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/Gene","nber_cols":1,"nber_rows":58347,"data_type":"STRING","imported":false},{"name":"/row_attrs/Accession","nber_cols":1,"nber_rows":58347,"data_type":"STRING","imported":false},{"name":"/row_attrs/_SumExonLength","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/isgene","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/featurestart","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/featurekey","nber_cols":1,"nber_rows":58347,"data_type":"STRING","imported":false},{"name":"/row_attrs/genus_species","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/featureend","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/derived_organ_ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/library_preparation_protocol.end_bias","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/donor_organism.diseases.ontology_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/total_umis","nber_cols":33028,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/derived_organ_parts_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/donor_organism.diseases.ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/analysis_working_group_approval_status","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/emptydrops_is_cell","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/specimen_from_organism.organ.ontology_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/cell_suspension.genus_species.ontology_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/donor_organism.is_living","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/specimen_from_organism.organ_parts.ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/donor_organism.development_stage.ontology_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/attrs/LOOM_SPEC_VERSION","nber_cols":1,"nber_rows":1,"data_type":"NOT_HANDLED","imported":false},{"name":"/col_attrs/library_preparation_protocol.library_construction_method.ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/donor_organism.human_specific.ethnicity.ontology","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/derived_organ_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/library_preparation_protocol.library_construction_method.ontology_label","nber_cols":33028,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/_Mitochondrial_Content","nber_cols":33028,"nber_rows":1,"data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data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"sel_provider_projects\" data-run-param-info-label-value=\"Sel provider projects\" data-run-param-info-description-value=\"\" data-run-param-info-value-value=\"{}\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eSel provider projects:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e{}\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"provider_project_id\" data-run-param-info-label-value=\"Provider project\" data-run-param-info-description-value=\"\" data-run-param-info-value-value=\"4d6f6c96-2a83-43d8-8fe1-0f53bffd4674\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eProvider project:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e4d6f6c96-2a83-43d8-8fe1-0f53bffd4674\u003c/span\u003e\u003c/span\u003e\u003c/div\u003e","nber_cols":299486,"nber_rows":58347,"url":"https://asap.epfl.ch/projects/dprlat/get_file?filename=parsing%2Foutput.loom","url_h5ad":"https://asap.epfl.ch/projects/dprlat/get_file?filename=parsing%2Foutput.h5ad","content":[{"name":"/col_attrs/file_uuid","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/emptydrops_is_cell","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/row_attrs/_Biotypes","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/chromosome","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/cell_suspension.provenance.document_id","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/library_preparation_protocol.library_construction_method.ontology_label","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/row_attrs/featuretype","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/specimen_from_organism.organ_parts.ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/project.project_core.project_short_name","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/_Protein_Coding_Content","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Ribosomal_Content","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/Gene","nber_cols":1,"nber_rows":58347,"data_type":"STRING","imported":false},{"name":"/col_attrs/_Depth","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Detected_Genes","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Mitochondrial_Content","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_StableID","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/Accession","nber_cols":1,"nber_rows":58347,"data_type":"STRING","imported":false},{"name":"/row_attrs/_Sum","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_SumExonLength","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_Chromosomes","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":false},{"name":"/matrix","nber_cols":299486,"nber_rows":58347,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/CellID","nber_cols":299486,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/attrs/LOOM_SPEC_VERSION","nber_cols":1,"nber_rows":1,"data_type":"NOT_HANDLED","imported":false},{"name":"/col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/donor_organism.diseases.ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/analysis_working_group_approval_status","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/derived_organ_parts_ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/cell_suspension.genus_species.ontology_label","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/donor_organism.sex","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology_label","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/specimen_from_organism.organ.ontology_label","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/row_attrs/featurestart","nber_cols":1,"nber_rows":58347,"data_type":"NUMERIC","imported":true},{"name":"/col_attrs/donor_organism.is_living","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/barcode","nber_cols":299486,"nber_rows":1,"data_type":"STRING","imported":true},{"name":"/col_attrs/genes_detected","nber_cols":299486,"nber_rows":1,"data_type":"NUMERIC","imported":true},{"name":"/col_attrs/donor_organism.development_stage.ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/row_attrs/isgene","nber_cols":1,"nber_rows":58347,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/library_preparation_protocol.strand","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/derived_organ_ontology","nber_cols":299486,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/specimen_from_organism.organ_parts.ontology_label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