## This script contains all commands executed in the PROJECT 87qp4i and can be run again using the ASAP_run docker (https://hub.docker.com/layers/fabdavid/asap_run) echo '*******************Reproducing analysis of PROJECT 87qp4i / ASAP44**********************' echo '***************************************************************************************' ## CONFIGURATION (edit below to match your machine; lines until the separator) export ASAP_PROJECTS_DIR=/asap_projects ## change this to write analysis results there (there will be subdirectory for each project key). export LOOM_DIR=$ASAP_PROJECTS_DIR/loom_files export ASAP_DATA_DB_HOST=localhost; export ASAP_DATA_DB_PORT=5432 export PSQL_DIR=/usr/pgsql-10/bin ## ========================================================= export PROJECT_DIR=$ASAP_PROJECTS_DIR/87qp4i ## Pull Docker images (must run before any docker run in this script) docker pull fabdavid/asap_run:v5 ## Host LOOM staging directory (inside Docker volume) docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $LOOM_DIR; chmod 777 $LOOM_DIR" echo 'This project is PUBLIC => Nothing to do' ## Local PostgreSQL: create ASAP data database and load dump if missing if ! psql -lqt | cut -d \| -f 1 | grep -qw asap_data_v5; then echo 'Create database asap_data_v5'; echo '$PSQL_DIR/createdb -p $ASAP_DATA_DB_PORT asap_data_v5'; $PSQL_DIR/createdb -p $ASAP_DATA_DB_PORT asap_data_v5; echo 'wget -qO - https://asap.epfl.ch/dumps/asap_data_v5.sql.gz | gunzip | grep -v \'AS integer\' | $PSQL_DIR/psql -p $ASAP_DATA_DB_PORT asap_data_v5'; wget -qO - https://asap.epfl.ch/dumps/asap_data_v5.sql.gz | gunzip | grep -v 'AS integer' | $PSQL_DIR/psql -p $ASAP_DATA_DB_PORT asap_data_v5; fi ## Project directory on the shared volume docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR" ## Step output directories (one folder per pipeline step that has runs) docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/parsing/ && mkdir -p $PROJECT_DIR/normalization/ && mkdir -p $PROJECT_DIR/markers/ && mkdir -p $PROJECT_DIR/marker_enrich/" ## Parsed LOOM file (public: wget; private: place file then symlink as below) echo 'Loading parsed Loom file...' docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "wget -qO $PROJECT_DIR/parsing/output.loom 'https://asap.epfl.ch/projects/87qp4i/get_file?filename=parsing/output.loom'" ## Re-execute each recorded run (parsing step is skipped; LOOM is already in place) ## ---------------------------------------------------------------- ## Run 73641 Normalization (Normalization #1 asap_seurat) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/normalization/73641/" ## Running Normalization [73641] [Normalization #1 asap_seurat] (input_matrix:parsing) echo '-> Running Normalization [73641] [Normalization #1 asap_seurat] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_73641 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T Normalization -loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/normalization/73641/output.json -oAnnot /layers/norm_1_asap_seurat -scaleFactor 10000 1> /data/asap2/users/1/87qp4i/normalization/73641/exec.out 2> /data/asap2/users/1/87qp4i/normalization/73641/exec.err'" ## ---------------------------------------------------------------- ## Run 127123 Find markers (Find markers #1 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127123/" ## Running Find markers [127123] [Find markers #1 asap_markers] () echo '-> Running Find markers [127123] [Find markers #1 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127123 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127123 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.8 --id 1133760 1> /data/asap2/users/1/87qp4i/markers/127123/exec.out 2> /data/asap2/users/1/87qp4i/markers/127123/exec.err'" ## ---------------------------------------------------------------- ## Run 127124 Marker enrichment (Marker enrichment #2 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127124/" ## Running Marker enrichment [127124] [Marker enrichment #2 asap_marker_enrichment] () echo '-> Running Marker enrichment [127124] [Marker enrichment #2 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127124 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127123 -o /data/asap2/users/1/87qp4i/markers/127124 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127124/exec.out 2> /data/asap2/users/1/87qp4i/markers/127124/exec.err'" ## ---------------------------------------------------------------- ## Run 127125 Find markers (Find markers #2 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127125/" ## Running Find markers [127125] [Find markers #2 asap_markers] () echo '-> Running Find markers [127125] [Find markers #2 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127125 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127125 --iAnnot /col_attrs/id --id 1133762 1> /data/asap2/users/1/87qp4i/markers/127125/exec.out 2> /data/asap2/users/1/87qp4i/markers/127125/exec.err'" ## ---------------------------------------------------------------- ## Run 127126 Marker enrichment (Marker enrichment #3 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127126/" ## Running Marker enrichment [127126] [Marker enrichment #3 asap_marker_enrichment] () echo '-> Running Marker enrichment [127126] [Marker enrichment #3 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127126 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127125 -o /data/asap2/users/1/87qp4i/markers/127126 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127126/exec.out 2> /data/asap2/users/1/87qp4i/markers/127126/exec.err'" ## ---------------------------------------------------------------- ## Run 127127 Find markers (Find markers #3 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127127/" ## Running Find markers [127127] [Find markers #3 asap_markers] () echo '-> Running Find markers [127127] [Find markers #3 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127127 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127127 --iAnnot /col_attrs/Clustering_Broad_Annotation__Relaxed_ --id 1133764 1> /data/asap2/users/1/87qp4i/markers/127127/exec.out 2> /data/asap2/users/1/87qp4i/markers/127127/exec.err'" ## ---------------------------------------------------------------- ## Run 127128 Marker enrichment (Marker enrichment #4 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127128/" ## Running Marker enrichment [127128] [Marker enrichment #4 asap_marker_enrichment] () echo '-> Running Marker enrichment [127128] [Marker enrichment #4 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127128 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127127 -o /data/asap2/users/1/87qp4i/markers/127128 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127128/exec.out 2> /data/asap2/users/1/87qp4i/markers/127128/exec.err'" ## ---------------------------------------------------------------- ## Run 127129 Find markers (Find markers #4 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127129/" ## Running Find markers [127129] [Find markers #4 asap_markers] () echo '-> Running Find markers [127129] [Find markers #4 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127129 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127129 --iAnnot /col_attrs/batch --id 1133765 1> /data/asap2/users/1/87qp4i/markers/127129/exec.out 2> /data/asap2/users/1/87qp4i/markers/127129/exec.err'" ## ---------------------------------------------------------------- ## Run 127130 Marker enrichment (Marker enrichment #5 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127130/" ## Running Marker enrichment [127130] [Marker enrichment #5 asap_marker_enrichment] () echo '-> Running Marker enrichment [127130] [Marker enrichment #5 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127130 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127129 -o /data/asap2/users/1/87qp4i/markers/127130 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127130/exec.out 2> /data/asap2/users/1/87qp4i/markers/127130/exec.err'" ## ---------------------------------------------------------------- ## Run 127131 Find markers (Find markers #5 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127131/" ## Running Find markers [127131] [Find markers #5 asap_markers] () echo '-> Running Find markers [127131] [Find markers #5 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127131 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127131 --iAnnot /col_attrs/Clustering_Leiden_resolution_8.0 --id 1133766 1> /data/asap2/users/1/87qp4i/markers/127131/exec.out 2> /data/asap2/users/1/87qp4i/markers/127131/exec.err'" ## ---------------------------------------------------------------- ## Run 127132 Marker enrichment (Marker enrichment #6 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127132/" ## Running Marker enrichment [127132] [Marker enrichment #6 asap_marker_enrichment] () echo '-> Running Marker enrichment [127132] [Marker enrichment #6 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127132 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127131 -o /data/asap2/users/1/87qp4i/markers/127132 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127132/exec.out 2> /data/asap2/users/1/87qp4i/markers/127132/exec.err'" ## ---------------------------------------------------------------- ## Run 127133 Find markers (Find markers #6 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127133/" ## Running Find markers [127133] [Find markers #6 asap_markers] () echo '-> Running Find markers [127133] [Find markers #6 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127133 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127133 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.4 --id 1133767 1> /data/asap2/users/1/87qp4i/markers/127133/exec.out 2> /data/asap2/users/1/87qp4i/markers/127133/exec.err'" ## ---------------------------------------------------------------- ## Run 127134 Marker enrichment (Marker enrichment #7 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127134/" ## Running Marker enrichment [127134] [Marker enrichment #7 asap_marker_enrichment] () echo '-> Running Marker enrichment [127134] [Marker enrichment #7 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127134 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127133 -o /data/asap2/users/1/87qp4i/markers/127134 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127134/exec.out 2> /data/asap2/users/1/87qp4i/markers/127134/exec.err'" ## ---------------------------------------------------------------- ## Run 127135 Find markers (Find markers #7 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127135/" ## Running Find markers [127135] [Find markers #7 asap_markers] () echo '-> Running Find markers [127135] [Find markers #7 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127135 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127135 --iAnnot /col_attrs/tissue --id 1133768 1> /data/asap2/users/1/87qp4i/markers/127135/exec.out 2> /data/asap2/users/1/87qp4i/markers/127135/exec.err'" ## ---------------------------------------------------------------- ## Run 127136 Marker enrichment (Marker enrichment #8 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127136/" ## Running Marker enrichment [127136] [Marker enrichment #8 asap_marker_enrichment] () echo '-> Running Marker enrichment [127136] [Marker enrichment #8 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127136 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127135 -o /data/asap2/users/1/87qp4i/markers/127136 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127136/exec.out 2> /data/asap2/users/1/87qp4i/markers/127136/exec.err'" ## ---------------------------------------------------------------- ## Run 127137 Find markers (Find markers #8 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127137/" ## Running Find markers [127137] [Find markers #8 asap_markers] () echo '-> Running Find markers [127137] [Find markers #8 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127137 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127137 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.0__1_ --id 1133769 1> /data/asap2/users/1/87qp4i/markers/127137/exec.out 2> /data/asap2/users/1/87qp4i/markers/127137/exec.err'" ## ---------------------------------------------------------------- ## Run 127138 Marker enrichment (Marker enrichment #9 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127138/" ## Running Marker enrichment [127138] [Marker enrichment #9 asap_marker_enrichment] () echo '-> Running Marker enrichment [127138] [Marker enrichment #9 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127138 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127137 -o /data/asap2/users/1/87qp4i/markers/127138 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127138/exec.out 2> /data/asap2/users/1/87qp4i/markers/127138/exec.err'" ## ---------------------------------------------------------------- ## Run 127139 Find markers (Find markers #9 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127139/" ## Running Find markers [127139] [Find markers #9 asap_markers] () echo '-> Running Find markers [127139] [Find markers #9 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127139 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127139 --iAnnot /col_attrs/note --id 1133770 1> /data/asap2/users/1/87qp4i/markers/127139/exec.out 2> /data/asap2/users/1/87qp4i/markers/127139/exec.err'" ## ---------------------------------------------------------------- ## Run 127140 Marker enrichment (Marker enrichment #10 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127140/" ## Running Marker enrichment [127140] [Marker enrichment #10 asap_marker_enrichment] () echo '-> Running Marker enrichment [127140] [Marker enrichment #10 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127140 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127139 -o /data/asap2/users/1/87qp4i/markers/127140 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127140/exec.out 2> /data/asap2/users/1/87qp4i/markers/127140/exec.err'" ## ---------------------------------------------------------------- ## Run 127141 Find markers (Find markers #10 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127141/" ## Running Find markers [127141] [Find markers #10 asap_markers] () echo '-> Running Find markers [127141] [Find markers #10 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127141 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127141 --iAnnot /col_attrs/Clustering_Leiden_resolution_16.0 --id 1133771 1> /data/asap2/users/1/87qp4i/markers/127141/exec.out 2> /data/asap2/users/1/87qp4i/markers/127141/exec.err'" ## ---------------------------------------------------------------- ## Run 127142 Marker enrichment (Marker enrichment #11 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127142/" ## Running Marker enrichment [127142] [Marker enrichment #11 asap_marker_enrichment] () echo '-> Running Marker enrichment [127142] [Marker enrichment #11 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127142 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127141 -o /data/asap2/users/1/87qp4i/markers/127142 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127142/exec.out 2> /data/asap2/users/1/87qp4i/markers/127142/exec.err'" ## ---------------------------------------------------------------- ## Run 127143 Find markers (Find markers #11 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127143/" ## Running Find markers [127143] [Find markers #11 asap_markers] () echo '-> Running Find markers [127143] [Find markers #11 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127143 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127143 --iAnnot /col_attrs/fca_id --id 1133772 1> /data/asap2/users/1/87qp4i/markers/127143/exec.out 2> /data/asap2/users/1/87qp4i/markers/127143/exec.err'" ## ---------------------------------------------------------------- ## Run 127144 Marker enrichment (Marker enrichment #12 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127144/" ## Running Marker enrichment [127144] [Marker enrichment #12 asap_marker_enrichment] () echo '-> Running Marker enrichment [127144] [Marker enrichment #12 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127144 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127143 -o /data/asap2/users/1/87qp4i/markers/127144 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127144/exec.out 2> /data/asap2/users/1/87qp4i/markers/127144/exec.err'" ## ---------------------------------------------------------------- ## Run 127145 Find markers (Find markers #12 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127145/" ## Running Find markers [127145] [Find markers #12 asap_markers] () echo '-> Running Find markers [127145] [Find markers #12 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127145 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127145 --iAnnot /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec --id 1133774 1> /data/asap2/users/1/87qp4i/markers/127145/exec.out 2> /data/asap2/users/1/87qp4i/markers/127145/exec.err'" ## ---------------------------------------------------------------- ## Run 127146 Marker enrichment (Marker enrichment #13 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127146/" ## Running Marker enrichment [127146] [Marker enrichment #13 asap_marker_enrichment] () echo '-> Running Marker enrichment [127146] [Marker enrichment #13 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127146 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127145 -o /data/asap2/users/1/87qp4i/markers/127146 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127146/exec.out 2> /data/asap2/users/1/87qp4i/markers/127146/exec.err'" ## ---------------------------------------------------------------- ## Run 127147 Find markers (Find markers #13 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127147/" ## Running Find markers [127147] [Find markers #13 asap_markers] () echo '-> Running Find markers [127147] [Find markers #13 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127147 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127147 --iAnnot /col_attrs/annotation_broad__ontology_id --id 1133776 1> /data/asap2/users/1/87qp4i/markers/127147/exec.out 2> /data/asap2/users/1/87qp4i/markers/127147/exec.err'" ## ---------------------------------------------------------------- ## Run 127148 Marker enrichment (Marker enrichment #14 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127148/" ## Running Marker enrichment [127148] [Marker enrichment #14 asap_marker_enrichment] () echo '-> Running Marker enrichment [127148] [Marker enrichment #14 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127148 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127147 -o /data/asap2/users/1/87qp4i/markers/127148 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127148/exec.out 2> /data/asap2/users/1/87qp4i/markers/127148/exec.err'" ## ---------------------------------------------------------------- ## Run 127149 Find markers (Find markers #14 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127149/" ## Running Find markers [127149] [Find markers #14 asap_markers] () echo '-> Running Find markers [127149] [Find markers #14 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127149 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127149 --iAnnot /col_attrs/Clustering_Leiden_resolution_18.0 --id 1133777 1> /data/asap2/users/1/87qp4i/markers/127149/exec.out 2> /data/asap2/users/1/87qp4i/markers/127149/exec.err'" ## ---------------------------------------------------------------- ## Run 127150 Marker enrichment (Marker enrichment #15 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127150/" ## Running Marker enrichment [127150] [Marker enrichment #15 asap_marker_enrichment] () echo '-> Running Marker enrichment [127150] [Marker enrichment #15 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127150 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127149 -o /data/asap2/users/1/87qp4i/markers/127150 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127150/exec.out 2> /data/asap2/users/1/87qp4i/markers/127150/exec.err'" ## ---------------------------------------------------------------- ## Run 127151 Find markers (Find markers #15 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127151/" ## Running Find markers [127151] [Find markers #15 asap_markers] () echo '-> Running Find markers [127151] [Find markers #15 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127151 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127151 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.2 --id 1133778 1> /data/asap2/users/1/87qp4i/markers/127151/exec.out 2> /data/asap2/users/1/87qp4i/markers/127151/exec.err'" ## ---------------------------------------------------------------- ## Run 127152 Marker enrichment (Marker enrichment #16 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127152/" ## Running Marker enrichment [127152] [Marker enrichment #16 asap_marker_enrichment] () echo '-> Running Marker enrichment [127152] [Marker enrichment #16 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127152 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127151 -o /data/asap2/users/1/87qp4i/markers/127152 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127152/exec.out 2> /data/asap2/users/1/87qp4i/markers/127152/exec.err'" ## ---------------------------------------------------------------- ## Run 127153 Find markers (Find markers #16 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127153/" ## Running Find markers [127153] [Find markers #16 asap_markers] () echo '-> Running Find markers [127153] [Find markers #16 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127153 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127153 --iAnnot /col_attrs/age --id 1133779 1> /data/asap2/users/1/87qp4i/markers/127153/exec.out 2> /data/asap2/users/1/87qp4i/markers/127153/exec.err'" ## ---------------------------------------------------------------- ## Run 127154 Marker enrichment (Marker enrichment #17 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127154/" ## Running Marker enrichment [127154] [Marker enrichment #17 asap_marker_enrichment] () echo '-> Running Marker enrichment [127154] [Marker enrichment #17 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127154 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127153 -o /data/asap2/users/1/87qp4i/markers/127154 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127154/exec.out 2> /data/asap2/users/1/87qp4i/markers/127154/exec.err'" ## ---------------------------------------------------------------- ## Run 127155 Find markers (Find markers #17 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127155/" ## Running Find markers [127155] [Find markers #17 asap_markers] () echo '-> Running Find markers [127155] [Find markers #17 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127155 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127155 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.6 --id 1133782 1> /data/asap2/users/1/87qp4i/markers/127155/exec.out 2> /data/asap2/users/1/87qp4i/markers/127155/exec.err'" ## ---------------------------------------------------------------- ## Run 127156 Marker enrichment (Marker enrichment #18 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127156/" ## Running Marker enrichment [127156] [Marker enrichment #18 asap_marker_enrichment] () echo '-> Running Marker enrichment [127156] [Marker enrichment #18 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127156 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127155 -o /data/asap2/users/1/87qp4i/markers/127156 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127156/exec.out 2> /data/asap2/users/1/87qp4i/markers/127156/exec.err'" ## ---------------------------------------------------------------- ## Run 127157 Find markers (Find markers #18 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127157/" ## Running Find markers [127157] [Find markers #18 asap_markers] () echo '-> Running Find markers [127157] [Find markers #18 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127157 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127157 --iAnnot /col_attrs/ClusterID --id 1133784 1> /data/asap2/users/1/87qp4i/markers/127157/exec.out 2> /data/asap2/users/1/87qp4i/markers/127157/exec.err'" ## ---------------------------------------------------------------- ## Run 127158 Marker enrichment (Marker enrichment #19 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127158/" ## Running Marker enrichment [127158] [Marker enrichment #19 asap_marker_enrichment] () echo '-> Running Marker enrichment [127158] [Marker enrichment #19 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127158 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127157 -o /data/asap2/users/1/87qp4i/markers/127158 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127158/exec.out 2> /data/asap2/users/1/87qp4i/markers/127158/exec.err'" ## ---------------------------------------------------------------- ## Run 127159 Find markers (Find markers #19 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127159/" ## Running Find markers [127159] [Find markers #19 asap_markers] () echo '-> Running Find markers [127159] [Find markers #19 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127159 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127159 --iAnnot /col_attrs/Clustering_Annotation --id 1133785 1> /data/asap2/users/1/87qp4i/markers/127159/exec.out 2> /data/asap2/users/1/87qp4i/markers/127159/exec.err'" ## ---------------------------------------------------------------- ## Run 127160 Marker enrichment (Marker enrichment #20 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127160/" ## Running Marker enrichment [127160] [Marker enrichment #20 asap_marker_enrichment] () echo '-> Running Marker enrichment [127160] [Marker enrichment #20 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127160 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127159 -o /data/asap2/users/1/87qp4i/markers/127160 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127160/exec.out 2> /data/asap2/users/1/87qp4i/markers/127160/exec.err'" ## ---------------------------------------------------------------- ## Run 127161 Find markers (Find markers #20 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127161/" ## Running Find markers [127161] [Find markers #20 asap_markers] () echo '-> Running Find markers [127161] [Find markers #20 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127161 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127161 --iAnnot /col_attrs/annotation__ontology_id --id 1133788 1> /data/asap2/users/1/87qp4i/markers/127161/exec.out 2> /data/asap2/users/1/87qp4i/markers/127161/exec.err'" ## ---------------------------------------------------------------- ## Run 127162 Marker enrichment (Marker enrichment #21 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127162/" ## Running Marker enrichment [127162] [Marker enrichment #21 asap_marker_enrichment] () echo '-> Running Marker enrichment [127162] [Marker enrichment #21 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127162 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127161 -o /data/asap2/users/1/87qp4i/markers/127162 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127162/exec.out 2> /data/asap2/users/1/87qp4i/markers/127162/exec.err'" ## ---------------------------------------------------------------- ## Run 127163 Find markers (Find markers #21 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127163/" ## Running Find markers [127163] [Find markers #21 asap_markers] () echo '-> Running Find markers [127163] [Find markers #21 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127163 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127163 --iAnnot /col_attrs/R_annotation__ontology_id --id 1133790 1> /data/asap2/users/1/87qp4i/markers/127163/exec.out 2> /data/asap2/users/1/87qp4i/markers/127163/exec.err'" ## ---------------------------------------------------------------- ## Run 127164 Marker enrichment (Marker enrichment #22 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127164/" ## Running Marker enrichment [127164] [Marker enrichment #22 asap_marker_enrichment] () echo '-> Running Marker enrichment [127164] [Marker enrichment #22 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127164 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127163 -o /data/asap2/users/1/87qp4i/markers/127164 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127164/exec.out 2> /data/asap2/users/1/87qp4i/markers/127164/exec.err'" ## ---------------------------------------------------------------- ## Run 127165 Find markers (Find markers #22 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127165/" ## Running Find markers [127165] [Find markers #22 asap_markers] () echo '-> Running Find markers [127165] [Find markers #22 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127165 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127165 --iAnnot /col_attrs/annotation --id 1133791 1> /data/asap2/users/1/87qp4i/markers/127165/exec.out 2> /data/asap2/users/1/87qp4i/markers/127165/exec.err'" ## ---------------------------------------------------------------- ## Run 127166 Marker enrichment (Marker enrichment #23 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127166/" ## Running Marker enrichment [127166] [Marker enrichment #23 asap_marker_enrichment] () echo '-> Running Marker enrichment [127166] [Marker enrichment #23 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127166 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127165 -o /data/asap2/users/1/87qp4i/markers/127166 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127166/exec.out 2> /data/asap2/users/1/87qp4i/markers/127166/exec.err'" ## ---------------------------------------------------------------- ## Run 127167 Find markers (Find markers #23 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127167/" ## Running Find markers [127167] [Find markers #23 asap_markers] () echo '-> Running Find markers [127167] [Find markers #23 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127167 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127167 --iAnnot /col_attrs/R_annotation_broad__ontology_id --id 1133792 1> /data/asap2/users/1/87qp4i/markers/127167/exec.out 2> /data/asap2/users/1/87qp4i/markers/127167/exec.err'" ## ---------------------------------------------------------------- ## Run 127168 Marker enrichment (Marker enrichment #24 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127168/" ## Running Marker enrichment [127168] [Marker enrichment #24 asap_marker_enrichment] () echo '-> Running Marker enrichment [127168] [Marker enrichment #24 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127168 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127167 -o /data/asap2/users/1/87qp4i/markers/127168 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127168/exec.out 2> /data/asap2/users/1/87qp4i/markers/127168/exec.err'" ## ---------------------------------------------------------------- ## Run 127169 Find markers (Find markers #24 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127169/" ## Running Find markers [127169] [Find markers #24 asap_markers] () echo '-> Running Find markers [127169] [Find markers #24 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127169 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127169 --iAnnot /col_attrs/Clustering_Leiden_resolution_25.0 --id 1133793 1> /data/asap2/users/1/87qp4i/markers/127169/exec.out 2> /data/asap2/users/1/87qp4i/markers/127169/exec.err'" ## ---------------------------------------------------------------- ## Run 127170 Marker enrichment (Marker enrichment #25 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127170/" ## Running Marker enrichment [127170] [Marker enrichment #25 asap_marker_enrichment] () echo '-> Running Marker enrichment [127170] [Marker enrichment #25 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127170 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127169 -o /data/asap2/users/1/87qp4i/markers/127170 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127170/exec.out 2> /data/asap2/users/1/87qp4i/markers/127170/exec.err'" ## ---------------------------------------------------------------- ## Run 127171 Find markers (Find markers #25 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127171/" ## Running Find markers [127171] [Find markers #25 asap_markers] () echo '-> Running Find markers [127171] [Find markers #25 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127171 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127171 --iAnnot /col_attrs/Clustering_Leiden_resolution_4.0 --id 1133794 1> /data/asap2/users/1/87qp4i/markers/127171/exec.out 2> /data/asap2/users/1/87qp4i/markers/127171/exec.err'" ## ---------------------------------------------------------------- ## Run 127172 Marker enrichment (Marker enrichment #26 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127172/" ## Running Marker enrichment [127172] [Marker enrichment #26 asap_marker_enrichment] () echo '-> Running Marker enrichment [127172] [Marker enrichment #26 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127172 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127171 -o /data/asap2/users/1/87qp4i/markers/127172 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127172/exec.out 2> /data/asap2/users/1/87qp4i/markers/127172/exec.err'" ## ---------------------------------------------------------------- ## Run 127173 Find markers (Find markers #26 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127173/" ## Running Find markers [127173] [Find markers #26 asap_markers] () echo '-> Running Find markers [127173] [Find markers #26 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127173 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127173 --iAnnot /col_attrs/celda_decontx__clusters --id 1133795 1> /data/asap2/users/1/87qp4i/markers/127173/exec.out 2> /data/asap2/users/1/87qp4i/markers/127173/exec.err'" ## ---------------------------------------------------------------- ## Run 127174 Marker enrichment (Marker enrichment #27 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127174/" ## Running Marker enrichment [127174] [Marker enrichment #27 asap_marker_enrichment] () echo '-> Running Marker enrichment [127174] [Marker enrichment #27 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127174 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127173 -o /data/asap2/users/1/87qp4i/markers/127174 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127174/exec.out 2> /data/asap2/users/1/87qp4i/markers/127174/exec.err'" ## ---------------------------------------------------------------- ## Run 127175 Find markers (Find markers #27 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127175/" ## Running Find markers [127175] [Find markers #27 asap_markers] () echo '-> Running Find markers [127175] [Find markers #27 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127175 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127175 --iAnnot /col_attrs/R_annotation --id 1133796 1> /data/asap2/users/1/87qp4i/markers/127175/exec.out 2> /data/asap2/users/1/87qp4i/markers/127175/exec.err'" ## ---------------------------------------------------------------- ## Run 127176 Marker enrichment (Marker enrichment #28 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127176/" ## Running Marker enrichment [127176] [Marker enrichment #28 asap_marker_enrichment] () echo '-> Running Marker enrichment [127176] [Marker enrichment #28 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127176 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127175 -o /data/asap2/users/1/87qp4i/markers/127176 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127176/exec.out 2> /data/asap2/users/1/87qp4i/markers/127176/exec.err'" ## ---------------------------------------------------------------- ## Run 127177 Find markers (Find markers #28 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127177/" ## Running Find markers [127177] [Find markers #28 asap_markers] () echo '-> Running Find markers [127177] [Find markers #28 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127177 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127177 --iAnnot /col_attrs/leiden --id 1133798 1> /data/asap2/users/1/87qp4i/markers/127177/exec.out 2> /data/asap2/users/1/87qp4i/markers/127177/exec.err'" ## ---------------------------------------------------------------- ## Run 127178 Marker enrichment (Marker enrichment #29 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127178/" ## Running Marker enrichment [127178] [Marker enrichment #29 asap_marker_enrichment] () echo '-> Running Marker enrichment [127178] [Marker enrichment #29 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127178 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127177 -o /data/asap2/users/1/87qp4i/markers/127178 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127178/exec.out 2> /data/asap2/users/1/87qp4i/markers/127178/exec.err'" ## ---------------------------------------------------------------- ## Run 127179 Find markers (Find markers #29 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127179/" ## Running Find markers [127179] [Find markers #29 asap_markers] () echo '-> Running Find markers [127179] [Find markers #29 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127179 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127179 --iAnnot /col_attrs/Clustering_Leiden_resolution_0.4__default__221_ --id 1133801 1> /data/asap2/users/1/87qp4i/markers/127179/exec.out 2> /data/asap2/users/1/87qp4i/markers/127179/exec.err'" ## ---------------------------------------------------------------- ## Run 127180 Marker enrichment (Marker enrichment #30 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127180/" ## Running Marker enrichment [127180] [Marker enrichment #30 asap_marker_enrichment] () echo '-> Running Marker enrichment [127180] [Marker enrichment #30 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127180 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127179 -o /data/asap2/users/1/87qp4i/markers/127180 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127180/exec.out 2> /data/asap2/users/1/87qp4i/markers/127180/exec.err'" ## ---------------------------------------------------------------- ## Run 127181 Find markers (Find markers #30 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127181/" ## Running Find markers [127181] [Find markers #30 asap_markers] () echo '-> Running Find markers [127181] [Find markers #30 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127181 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127181 --iAnnot /col_attrs/Clustering_Broad_Annotation_Extrapolated --id 1133802 1> /data/asap2/users/1/87qp4i/markers/127181/exec.out 2> /data/asap2/users/1/87qp4i/markers/127181/exec.err'" ## ---------------------------------------------------------------- ## Run 127182 Marker enrichment (Marker enrichment #31 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127182/" ## Running Marker enrichment [127182] [Marker enrichment #31 asap_marker_enrichment] () echo '-> Running Marker enrichment [127182] [Marker enrichment #31 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127182 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127181 -o /data/asap2/users/1/87qp4i/markers/127182 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127182/exec.out 2> /data/asap2/users/1/87qp4i/markers/127182/exec.err'" ## ---------------------------------------------------------------- ## Run 127183 Find markers (Find markers #31 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127183/" ## Running Find markers [127183] [Find markers #31 asap_markers] () echo '-> Running Find markers [127183] [Find markers #31 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127183 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127183 --iAnnot /col_attrs/fly_genetics --id 1133803 1> /data/asap2/users/1/87qp4i/markers/127183/exec.out 2> /data/asap2/users/1/87qp4i/markers/127183/exec.err'" ## ---------------------------------------------------------------- ## Run 127184 Marker enrichment (Marker enrichment #32 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127184/" ## Running Marker enrichment [127184] [Marker enrichment #32 asap_marker_enrichment] () echo '-> Running Marker enrichment [127184] [Marker enrichment #32 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127184 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127183 -o /data/asap2/users/1/87qp4i/markers/127184 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127184/exec.out 2> /data/asap2/users/1/87qp4i/markers/127184/exec.err'" ## ---------------------------------------------------------------- ## Run 127185 Find markers (Find markers #32 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127185/" ## Running Find markers [127185] [Find markers #32 asap_markers] () echo '-> Running Find markers [127185] [Find markers #32 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127185 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127185 --iAnnot /col_attrs/scrublet__predicted_doublets --id 1133804 1> /data/asap2/users/1/87qp4i/markers/127185/exec.out 2> /data/asap2/users/1/87qp4i/markers/127185/exec.err'" ## ---------------------------------------------------------------- ## Run 127186 Marker enrichment (Marker enrichment #33 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127186/" ## Running Marker enrichment [127186] [Marker enrichment #33 asap_marker_enrichment] () echo '-> Running Marker enrichment [127186] [Marker enrichment #33 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127186 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127185 -o /data/asap2/users/1/87qp4i/markers/127186 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127186/exec.out 2> /data/asap2/users/1/87qp4i/markers/127186/exec.err'" ## ---------------------------------------------------------------- ## Run 127187 Find markers (Find markers #33 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127187/" ## Running Find markers [127187] [Find markers #33 asap_markers] () echo '-> Running Find markers [127187] [Find markers #33 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127187 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127187 --iAnnot /col_attrs/Clustering_Leiden_resolution_0.6 --id 1133806 1> /data/asap2/users/1/87qp4i/markers/127187/exec.out 2> /data/asap2/users/1/87qp4i/markers/127187/exec.err'" ## ---------------------------------------------------------------- ## Run 127188 Marker enrichment (Marker enrichment #34 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127188/" ## Running Marker enrichment [127188] [Marker enrichment #34 asap_marker_enrichment] () echo '-> Running Marker enrichment [127188] [Marker enrichment #34 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127188 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127187 -o /data/asap2/users/1/87qp4i/markers/127188 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127188/exec.out 2> /data/asap2/users/1/87qp4i/markers/127188/exec.err'" ## ---------------------------------------------------------------- ## Run 127189 Find markers (Find markers #34 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127189/" ## Running Find markers [127189] [Find markers #34 asap_markers] () echo '-> Running Find markers [127189] [Find markers #34 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127189 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127189 --iAnnot /col_attrs/Clustering_Leiden_resolution_20.0 --id 1133808 1> /data/asap2/users/1/87qp4i/markers/127189/exec.out 2> /data/asap2/users/1/87qp4i/markers/127189/exec.err'" ## ---------------------------------------------------------------- ## Run 127190 Marker enrichment (Marker enrichment #35 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127190/" ## Running Marker enrichment [127190] [Marker enrichment #35 asap_marker_enrichment] () echo '-> Running Marker enrichment [127190] [Marker enrichment #35 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127190 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127189 -o /data/asap2/users/1/87qp4i/markers/127190 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127190/exec.out 2> /data/asap2/users/1/87qp4i/markers/127190/exec.err'" ## ---------------------------------------------------------------- ## Run 127191 Find markers (Find markers #35 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127191/" ## Running Find markers [127191] [Find markers #35 asap_markers] () echo '-> Running Find markers [127191] [Find markers #35 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127191 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127191 --iAnnot /col_attrs/batch_id --id 1133809 1> /data/asap2/users/1/87qp4i/markers/127191/exec.out 2> /data/asap2/users/1/87qp4i/markers/127191/exec.err'" ## ---------------------------------------------------------------- ## Run 127192 Marker enrichment (Marker enrichment #36 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127192/" ## Running Marker enrichment [127192] [Marker enrichment #36 asap_marker_enrichment] () echo '-> Running Marker enrichment [127192] [Marker enrichment #36 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127192 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127191 -o /data/asap2/users/1/87qp4i/markers/127192 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127192/exec.out 2> /data/asap2/users/1/87qp4i/markers/127192/exec.err'" ## ---------------------------------------------------------------- ## Run 127193 Find markers (Find markers #36 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127193/" ## Running Find markers [127193] [Find markers #36 asap_markers] () echo '-> Running Find markers [127193] [Find markers #36 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127193 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127193 --iAnnot /col_attrs/dissection_lab --id 1133810 1> /data/asap2/users/1/87qp4i/markers/127193/exec.out 2> /data/asap2/users/1/87qp4i/markers/127193/exec.err'" ## ---------------------------------------------------------------- ## Run 127194 Marker enrichment (Marker enrichment #37 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127194/" ## Running Marker enrichment [127194] [Marker enrichment #37 asap_marker_enrichment] () echo '-> Running Marker enrichment [127194] [Marker enrichment #37 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127194 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127193 -o /data/asap2/users/1/87qp4i/markers/127194 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127194/exec.out 2> /data/asap2/users/1/87qp4i/markers/127194/exec.err'" ## ---------------------------------------------------------------- ## Run 127195 Find markers (Find markers #37 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127195/" ## Running Find markers [127195] [Find markers #37 asap_markers] () echo '-> Running Find markers [127195] [Find markers #37 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127195 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127195 --iAnnot /col_attrs/Clustering_Leiden_resolution_12.0 --id 1133811 1> /data/asap2/users/1/87qp4i/markers/127195/exec.out 2> /data/asap2/users/1/87qp4i/markers/127195/exec.err'" ## ---------------------------------------------------------------- ## Run 127196 Marker enrichment (Marker enrichment #38 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127196/" ## Running Marker enrichment [127196] [Marker enrichment #38 asap_marker_enrichment] () echo '-> Running Marker enrichment [127196] [Marker enrichment #38 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127196 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127195 -o /data/asap2/users/1/87qp4i/markers/127196 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127196/exec.out 2> /data/asap2/users/1/87qp4i/markers/127196/exec.err'" ## ---------------------------------------------------------------- ## Run 127197 Find markers (Find markers #38 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127197/" ## Running Find markers [127197] [Find markers #38 asap_markers] () echo '-> Running Find markers [127197] [Find markers #38 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127197 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127197 --iAnnot /col_attrs/sex --id 1133812 1> /data/asap2/users/1/87qp4i/markers/127197/exec.out 2> /data/asap2/users/1/87qp4i/markers/127197/exec.err'" ## ---------------------------------------------------------------- ## Run 127198 Marker enrichment (Marker enrichment #39 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127198/" ## Running Marker enrichment [127198] [Marker enrichment #39 asap_marker_enrichment] () echo '-> Running Marker enrichment [127198] [Marker enrichment #39 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127198 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127197 -o /data/asap2/users/1/87qp4i/markers/127198 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127198/exec.out 2> /data/asap2/users/1/87qp4i/markers/127198/exec.err'" ## ---------------------------------------------------------------- ## Run 127199 Find markers (Find markers #39 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127199/" ## Running Find markers [127199] [Find markers #39 asap_markers] () echo '-> Running Find markers [127199] [Find markers #39 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127199 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127199 --iAnnot /col_attrs/annotation_broad_extrapolated__ontology_id --id 1133814 1> /data/asap2/users/1/87qp4i/markers/127199/exec.out 2> /data/asap2/users/1/87qp4i/markers/127199/exec.err'" ## ---------------------------------------------------------------- ## Run 127200 Marker enrichment (Marker enrichment #40 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127200/" ## Running Marker enrichment [127200] [Marker enrichment #40 asap_marker_enrichment] () echo '-> Running Marker enrichment [127200] [Marker enrichment #40 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127200 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127199 -o /data/asap2/users/1/87qp4i/markers/127200 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127200/exec.out 2> /data/asap2/users/1/87qp4i/markers/127200/exec.err'" ## ---------------------------------------------------------------- ## Run 127201 Find markers (Find markers #40 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127201/" ## Running Find markers [127201] [Find markers #40 asap_markers] () echo '-> Running Find markers [127201] [Find markers #40 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127201 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127201 --iAnnot /col_attrs/Clustering_Leiden_resolution_0.8__178_ --id 1133815 1> /data/asap2/users/1/87qp4i/markers/127201/exec.out 2> /data/asap2/users/1/87qp4i/markers/127201/exec.err'" ## ---------------------------------------------------------------- ## Run 127202 Marker enrichment (Marker enrichment #41 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127202/" ## Running Marker enrichment [127202] [Marker enrichment #41 asap_marker_enrichment] () echo '-> Running Marker enrichment [127202] [Marker enrichment #41 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127202 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127201 -o /data/asap2/users/1/87qp4i/markers/127202 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127202/exec.out 2> /data/asap2/users/1/87qp4i/markers/127202/exec.err'" ## ---------------------------------------------------------------- ## Run 127203 Find markers (Find markers #41 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127203/" ## Running Find markers [127203] [Find markers #41 asap_markers] () echo '-> Running Find markers [127203] [Find markers #41 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127203 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127203 --iAnnot /col_attrs/annotation_broad --id 1133816 1> /data/asap2/users/1/87qp4i/markers/127203/exec.out 2> /data/asap2/users/1/87qp4i/markers/127203/exec.err'" ## ---------------------------------------------------------------- ## Run 127204 Marker enrichment (Marker enrichment #42 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127204/" ## Running Marker enrichment [127204] [Marker enrichment #42 asap_marker_enrichment] () echo '-> Running Marker enrichment [127204] [Marker enrichment #42 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127204 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127203 -o /data/asap2/users/1/87qp4i/markers/127204 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127204/exec.out 2> /data/asap2/users/1/87qp4i/markers/127204/exec.err'" ## ---------------------------------------------------------------- ## Run 127205 Find markers (Find markers #42 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127205/" ## Running Find markers [127205] [Find markers #42 asap_markers] () echo '-> Running Find markers [127205] [Find markers #42 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127205 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127205 --iAnnot /col_attrs/Clustering_Annotation__Relaxed_ --id 1133817 1> /data/asap2/users/1/87qp4i/markers/127205/exec.out 2> /data/asap2/users/1/87qp4i/markers/127205/exec.err'" ## ---------------------------------------------------------------- ## Run 127206 Marker enrichment (Marker enrichment #43 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127206/" ## Running Marker enrichment [127206] [Marker enrichment #43 asap_marker_enrichment] () echo '-> Running Marker enrichment [127206] [Marker enrichment #43 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127206 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127205 -o /data/asap2/users/1/87qp4i/markers/127206 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127206/exec.out 2> /data/asap2/users/1/87qp4i/markers/127206/exec.err'" ## ---------------------------------------------------------------- ## Run 127207 Find markers (Find markers #43 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127207/" ## Running Find markers [127207] [Find markers #43 asap_markers] () echo '-> Running Find markers [127207] [Find markers #43 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127207 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127207 --iAnnot /col_attrs/R_annotation_broad --id 1133818 1> /data/asap2/users/1/87qp4i/markers/127207/exec.out 2> /data/asap2/users/1/87qp4i/markers/127207/exec.err'" ## ---------------------------------------------------------------- ## Run 127208 Marker enrichment (Marker enrichment #44 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127208/" ## Running Marker enrichment [127208] [Marker enrichment #44 asap_marker_enrichment] () echo '-> Running Marker enrichment [127208] [Marker enrichment #44 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127208 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127207 -o /data/asap2/users/1/87qp4i/markers/127208 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127208/exec.out 2> /data/asap2/users/1/87qp4i/markers/127208/exec.err'" ## ---------------------------------------------------------------- ## Run 127209 Find markers (Find markers #44 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127209/" ## Running Find markers [127209] [Find markers #44 asap_markers] () echo '-> Running Find markers [127209] [Find markers #44 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127209 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127209 --iAnnot /col_attrs/Clustering_Leiden_resolution_6.0 --id 1133821 1> /data/asap2/users/1/87qp4i/markers/127209/exec.out 2> /data/asap2/users/1/87qp4i/markers/127209/exec.err'" ## ---------------------------------------------------------------- ## Run 127210 Marker enrichment (Marker enrichment #45 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127210/" ## Running Marker enrichment [127210] [Marker enrichment #45 asap_marker_enrichment] () echo '-> Running Marker enrichment [127210] [Marker enrichment #45 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127210 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127209 -o /data/asap2/users/1/87qp4i/markers/127210 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127210/exec.out 2> /data/asap2/users/1/87qp4i/markers/127210/exec.err'" ## ---------------------------------------------------------------- ## Run 127211 Find markers (Find markers #45 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127211/" ## Running Find markers [127211] [Find markers #45 asap_markers] () echo '-> Running Find markers [127211] [Find markers #45 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127211 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127211 --iAnnot /col_attrs/Clustering_Leiden_resolution_2.0 --id 1133822 1> /data/asap2/users/1/87qp4i/markers/127211/exec.out 2> /data/asap2/users/1/87qp4i/markers/127211/exec.err'" ## ---------------------------------------------------------------- ## Run 127212 Marker enrichment (Marker enrichment #46 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127212/" ## Running Marker enrichment [127212] [Marker enrichment #46 asap_marker_enrichment] () echo '-> Running Marker enrichment [127212] [Marker enrichment #46 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127212 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127211 -o /data/asap2/users/1/87qp4i/markers/127212 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127212/exec.out 2> /data/asap2/users/1/87qp4i/markers/127212/exec.err'" ## ---------------------------------------------------------------- ## Run 127213 Find markers (Find markers #46 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127213/" ## Running Find markers [127213] [Find markers #46 asap_markers] () echo '-> Running Find markers [127213] [Find markers #46 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127213 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127213 --iAnnot /col_attrs/Clustering_Leiden_resolution_14.0 --id 1133823 1> /data/asap2/users/1/87qp4i/markers/127213/exec.out 2> /data/asap2/users/1/87qp4i/markers/127213/exec.err'" ## ---------------------------------------------------------------- ## Run 127214 Marker enrichment (Marker enrichment #47 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127214/" ## Running Marker enrichment [127214] [Marker enrichment #47 asap_marker_enrichment] () echo '-> Running Marker enrichment [127214] [Marker enrichment #47 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127214 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127213 -o /data/asap2/users/1/87qp4i/markers/127214 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127214/exec.out 2> /data/asap2/users/1/87qp4i/markers/127214/exec.err'" ## ---------------------------------------------------------------- ## Run 127215 Find markers (Find markers #47 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127215/" ## Running Find markers [127215] [Find markers #47 asap_markers] () echo '-> Running Find markers [127215] [Find markers #47 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127215 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127215 --iAnnot /col_attrs/celda_decontx__doublemad_predicted_outliers --id 1133824 1> /data/asap2/users/1/87qp4i/markers/127215/exec.out 2> /data/asap2/users/1/87qp4i/markers/127215/exec.err'" ## ---------------------------------------------------------------- ## Run 127216 Marker enrichment (Marker enrichment #48 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127216/" ## Running Marker enrichment [127216] [Marker enrichment #48 asap_marker_enrichment] () echo '-> Running Marker enrichment [127216] [Marker enrichment #48 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127216 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127215 -o /data/asap2/users/1/87qp4i/markers/127216 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127216/exec.out 2> /data/asap2/users/1/87qp4i/markers/127216/exec.err'" ## ---------------------------------------------------------------- ## Run 127217 Find markers (Find markers #48 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127217/" ## Running Find markers [127217] [Find markers #48 asap_markers] () echo '-> Running Find markers [127217] [Find markers #48 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127217 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127217 --iAnnot /col_attrs/sample_id --id 1133825 1> /data/asap2/users/1/87qp4i/markers/127217/exec.out 2> /data/asap2/users/1/87qp4i/markers/127217/exec.err'" ## ---------------------------------------------------------------- ## Run 127218 Marker enrichment (Marker enrichment #49 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127218/" ## Running Marker enrichment [127218] [Marker enrichment #49 asap_marker_enrichment] () echo '-> Running Marker enrichment [127218] [Marker enrichment #49 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127218 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127217 -o /data/asap2/users/1/87qp4i/markers/127218 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127218/exec.out 2> /data/asap2/users/1/87qp4i/markers/127218/exec.err'" ## ---------------------------------------------------------------- ## Run 127219 Find markers (Find markers #49 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127219/" ## Running Find markers [127219] [Find markers #49 asap_markers] () echo '-> Running Find markers [127219] [Find markers #49 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127219 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127219 --iAnnot /col_attrs/Clustering_Broad_Annotation --id 1133826 1> /data/asap2/users/1/87qp4i/markers/127219/exec.out 2> /data/asap2/users/1/87qp4i/markers/127219/exec.err'" ## ---------------------------------------------------------------- ## Run 127220 Marker enrichment (Marker enrichment #50 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127220/" ## Running Marker enrichment [127220] [Marker enrichment #50 asap_marker_enrichment] () echo '-> Running Marker enrichment [127220] [Marker enrichment #50 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127220 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127219 -o /data/asap2/users/1/87qp4i/markers/127220 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127220/exec.out 2> /data/asap2/users/1/87qp4i/markers/127220/exec.err'" ## ---------------------------------------------------------------- ## Run 127221 Find markers (Find markers #50 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127221/" ## Running Find markers [127221] [Find markers #50 asap_markers] () echo '-> Running Find markers [127221] [Find markers #50 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127221 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127221 --iAnnot /col_attrs/annotation_broad_extrapolated --id 1133827 1> /data/asap2/users/1/87qp4i/markers/127221/exec.out 2> /data/asap2/users/1/87qp4i/markers/127221/exec.err'" ## ---------------------------------------------------------------- ## Run 127222 Marker enrichment (Marker enrichment #51 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127222/" ## Running Marker enrichment [127222] [Marker enrichment #51 asap_marker_enrichment] () echo '-> Running Marker enrichment [127222] [Marker enrichment #51 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127222 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127221 -o /data/asap2/users/1/87qp4i/markers/127222 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127222/exec.out 2> /data/asap2/users/1/87qp4i/markers/127222/exec.err'" ## ---------------------------------------------------------------- ## Run 127223 Find markers (Find markers #51 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/127223/" ## Running Find markers [127223] [Find markers #51 asap_markers] () echo '-> Running Find markers [127223] [Find markers #51 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127223 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/cell_filtering/127122/output.loom -o /data/asap2/users/1/87qp4i/markers/127223 --iAnnot /col_attrs/Clustering_Leiden_resolution_10.0 --id 1133831 1> /data/asap2/users/1/87qp4i/markers/127223/exec.out 2> /data/asap2/users/1/87qp4i/markers/127223/exec.err'" ## ---------------------------------------------------------------- ## Run 127224 Marker enrichment (Marker enrichment #52 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/127224/" ## Running Marker enrichment [127224] [Marker enrichment #52 asap_marker_enrichment] () echo '-> Running Marker enrichment [127224] [Marker enrichment #52 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_127224 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/127223 -o /data/asap2/users/1/87qp4i/markers/127224 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/127224/exec.out 2> /data/asap2/users/1/87qp4i/markers/127224/exec.err'" ## ---------------------------------------------------------------- ## Run 128315 Find markers (Find markers #52 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/128315/" ## Running Find markers [128315] [Find markers #52 asap_markers] () echo '-> Running Find markers [128315] [Find markers #52 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_128315 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/128315 --iAnnot /col_attrs/annotation --id 469093 1> /data/asap2/users/1/87qp4i/markers/128315/exec.out 2> /data/asap2/users/1/87qp4i/markers/128315/exec.err'" ## ---------------------------------------------------------------- ## Run 128316 Marker enrichment (Marker enrichment #53 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/128316/" ## Running Marker enrichment [128316] [Marker enrichment #53 asap_marker_enrichment] () echo '-> Running Marker enrichment [128316] [Marker enrichment #53 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_128316 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/128315 -o /data/asap2/users/1/87qp4i/markers/128316 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/128316/exec.out 2> /data/asap2/users/1/87qp4i/markers/128316/exec.err'" ## ---------------------------------------------------------------- ## Run 160254 Find markers (Find markers #53 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/160254/" ## Running Find markers [160254] [Find markers #53 asap_markers] () echo '-> Running Find markers [160254] [Find markers #53 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_160254 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/160254 --iAnnot /col_attrs/Clustering_Annotation --id 469082 1> /data/asap2/users/1/87qp4i/markers/160254/exec.out 2> /data/asap2/users/1/87qp4i/markers/160254/exec.err'" ## ---------------------------------------------------------------- ## Run 160255 Marker enrichment (Marker enrichment #54 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/160255/" ## Running Marker enrichment [160255] [Marker enrichment #54 asap_marker_enrichment] () echo '-> Running Marker enrichment [160255] [Marker enrichment #54 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_160255 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/160254 -o /data/asap2/users/1/87qp4i/markers/160255 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/160255/exec.out 2> /data/asap2/users/1/87qp4i/markers/160255/exec.err'" ## ---------------------------------------------------------------- ## Run 166627 Find markers (Find markers #54 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/166627/" ## Running Find markers [166627] [Find markers #54 asap_markers] () echo '-> Running Find markers [166627] [Find markers #54 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_166627 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/166627 --iAnnot /col_attrs/annotation_broad --id 469055 1> /data/asap2/users/1/87qp4i/markers/166627/exec.out 2> /data/asap2/users/1/87qp4i/markers/166627/exec.err'" ## ---------------------------------------------------------------- ## Run 166628 Marker enrichment (Marker enrichment #55 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/166628/" ## Running Marker enrichment [166628] [Marker enrichment #55 asap_marker_enrichment] () echo '-> Running Marker enrichment [166628] [Marker enrichment #55 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_166628 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/166627 -o /data/asap2/users/1/87qp4i/markers/166628 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/166628/exec.out 2> /data/asap2/users/1/87qp4i/markers/166628/exec.err'" ## ---------------------------------------------------------------- ## Run 166876 Find markers (Find markers #55 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/166876/" ## Running Find markers [166876] [Find markers #55 asap_markers] () echo '-> Running Find markers [166876] [Find markers #55 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_166876 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/166876 --iAnnot /col_attrs/batch_id --id 469107 1> /data/asap2/users/1/87qp4i/markers/166876/exec.out 2> /data/asap2/users/1/87qp4i/markers/166876/exec.err'" ## ---------------------------------------------------------------- ## Run 166877 Marker enrichment (Marker enrichment #56 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/166877/" ## Running Marker enrichment [166877] [Marker enrichment #56 asap_marker_enrichment] () echo '-> Running Marker enrichment [166877] [Marker enrichment #56 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_166877 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/166876 -o /data/asap2/users/1/87qp4i/markers/166877 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/166877/exec.out 2> /data/asap2/users/1/87qp4i/markers/166877/exec.err'" ## ---------------------------------------------------------------- ## Run 296115 Find markers (Find markers #56 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/296115/" ## Running Find markers [296115] [Find markers #56 asap_markers] () echo '-> Running Find markers [296115] [Find markers #56 asap_markers] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_296115 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/296115 --iAnnot /col_attrs/ClusterID --id 469056 --is_count_table 1> /data/asap2/users/1/87qp4i/markers/296115/exec.out 2> /data/asap2/users/1/87qp4i/markers/296115/exec.err'" ## ---------------------------------------------------------------- ## Run 296116 Marker enrichment (Marker enrichment #57 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/296116/" ## Running Marker enrichment [296116] [Marker enrichment #57 asap_marker_enrichment] () echo '-> Running Marker enrichment [296116] [Marker enrichment #57 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_296116 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/296115 -o /data/asap2/users/1/87qp4i/markers/296116 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/296116/exec.out 2> /data/asap2/users/1/87qp4i/markers/296116/exec.err'" ## ---------------------------------------------------------------- ## Run 342665 Find markers (Find markers #57 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/342665/" ## Running Find markers [342665] [Find markers #57 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [342665] [Find markers #57 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_342665 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/342665 --iAnnot /col_attrs/annotation --id 469093 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/342665/exec.out 2> /data/asap2/users/1/87qp4i/markers/342665/exec.err'" ## ---------------------------------------------------------------- ## Run 342666 Marker enrichment (Marker enrichment #58 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/342666/" ## Running Marker enrichment [342666] [Marker enrichment #58 asap_marker_enrichment] () echo '-> Running Marker enrichment [342666] [Marker enrichment #58 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_342666 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/342665 -o /data/asap2/users/1/87qp4i/markers/342666 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/342666/exec.out 2> /data/asap2/users/1/87qp4i/markers/342666/exec.err'" ## ---------------------------------------------------------------- ## Run 342671 Find markers (Find markers #58 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/342671/" ## Running Find markers [342671] [Find markers #58 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [342671] [Find markers #58 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_342671 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/342671 --iAnnot /col_attrs/Clustering_Annotation --id 469082 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/342671/exec.out 2> /data/asap2/users/1/87qp4i/markers/342671/exec.err'" ## ---------------------------------------------------------------- ## Run 342672 Marker enrichment (Marker enrichment #59 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/342672/" ## Running Marker enrichment [342672] [Marker enrichment #59 asap_marker_enrichment] () echo '-> Running Marker enrichment [342672] [Marker enrichment #59 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_342672 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/342671 -o /data/asap2/users/1/87qp4i/markers/342672 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/342672/exec.out 2> /data/asap2/users/1/87qp4i/markers/342672/exec.err'" ## ---------------------------------------------------------------- ## Run 348257 Find markers (Find markers #59 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/348257/" ## Running Find markers [348257] [Find markers #59 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [348257] [Find markers #59 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_348257 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/348257 --iAnnot /col_attrs/R_annotation --id 469115 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/348257/exec.out 2> /data/asap2/users/1/87qp4i/markers/348257/exec.err'" ## ---------------------------------------------------------------- ## Run 348258 Marker enrichment (Marker enrichment #60 asap_marker_enrichment) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/marker_enrich/348258/" ## Running Marker enrichment [348258] [Marker enrichment #60 asap_marker_enrichment] () echo '-> Running Marker enrichment [348258] [Marker enrichment #60 asap_marker_enrichment] ()' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_348258 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T MarkerEnrichment -i /data/asap2/users/1/87qp4i/markers/348257 -o /data/asap2/users/1/87qp4i/markers/348258 --genesets 671,672,673,2371,3138 -h $ASAP_DATA_DB_HOST:$ASAP_DATA_DB_PORT/asap_data_v5 1> /data/asap2/users/1/87qp4i/markers/348258/exec.out 2> /data/asap2/users/1/87qp4i/markers/348258/exec.err'" ## ---------------------------------------------------------------- ## Run 458045 Find markers (Find markers #60 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/458045/" ## Running Find markers [458045] [Find markers #60 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [458045] [Find markers #60 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_458045 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/458045 --iAnnot /col_attrs/age --id 469061 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/458045/exec.out 2> /data/asap2/users/1/87qp4i/markers/458045/exec.err'" ## ---------------------------------------------------------------- ## Run 567942 Find markers (Find markers #61 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/567942/" ## Running Find markers [567942] [Find markers #61 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [567942] [Find markers #61 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_567942 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/567942 --iAnnot /col_attrs/ClusterID --id 469056 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/567942/exec.out 2> /data/asap2/users/1/87qp4i/markers/567942/exec.err'" ## ---------------------------------------------------------------- ## Run 567943 Find markers (Find markers #62 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/567943/" ## Running Find markers [567943] [Find markers #62 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [567943] [Find markers #62 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_567943 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/567943 --iAnnot /col_attrs/Clustering_Leiden_resolution_1.8 --id 469098 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/567943/exec.out 2> /data/asap2/users/1/87qp4i/markers/567943/exec.err'" ## ---------------------------------------------------------------- ## Run 576021 Find markers (Find markers #63 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/576021/" ## Running Find markers [576021] [Find markers #63 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [576021] [Find markers #63 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_576021 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/576021 --iAnnot /col_attrs/sex --id 469110 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/576021/exec.out 2> /data/asap2/users/1/87qp4i/markers/576021/exec.err'" ## ---------------------------------------------------------------- ## Run 735017 Find markers (Find markers #64 asap_markers) ## ---------------------------------------------------------------- ## Ensure output directory exists docker run --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "mkdir -p $PROJECT_DIR/markers/735017/" ## Running Find markers [735017] [Find markers #64 asap_markers] (input_matrix:parsing) echo '-> Running Find markers [735017] [Find markers #64 asap_markers] (input_matrix:parsing)' ## Command docker run -v /data/asap2_test:/data/asap2_test --name asap_dev_735017 --net=host -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v $ASAP_PROJECTS_DIR:$ASAP_PROJECTS_DIR fabdavid/asap_run:v5 -c "sh -c 'java -jar /srv/ASAP.jar -T FindMarkers --loom /data/asap2/users/1/87qp4i/parsing/output.loom -o /data/asap2/users/1/87qp4i/markers/735017 --iAnnot /col_attrs/tissue --id 469087 --is_count_table true 1> /data/asap2/users/1/87qp4i/markers/735017/exec.out 2> /data/asap2/users/1/87qp4i/markers/735017/exec.err'"