[FCA] Malpighian tubule (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

5852wz

Project Name

[FCA] Malpighian tubule (10x, Relaxed)

TypeUnknown

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedApr 09, 2026

Reproducibility

Instructions List of commands

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
13	adult tracheocyte	SCope manual	ect vvl Nplp4 Gasp sano trh	-	+3 / -0	bbcf.epfl	May 30, 2022
11	adult oenocyte	SCope manual	FASN2 salm	-	+2 / -0	bbcf.epfl	May 30, 2022
8	adult hindgut	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
7	adult fat body	SCope manual	AkhR CG34166 apolpp CG6415 CG14990	-	+2 / -0	bbcf.epfl	May 30, 2022
4	adult Malpighian tubule principal cell of lower ureter	SCope manual	Chs2	-	+1 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell of lower segment	SCope manual	upd3 Alp4	-	+2 / -0	bbcf.epfl	May 30, 2022
2	adult Malpighian tubule principal cell of initial segment	SCope manual	Best2 CG16762	-	+2 / -0	bbcf.epfl	May 30, 2022
1	adult Malpighian tubule principal cell	SCope manual	Irk1 CapaR Dh31-R Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
37	subset of tubule principal cells	SCope manual	Irk1 Dh31-R wtrw	-	+1 / -0	bbcf.epfl	May 30, 2022
15	? subset of principal cells?	SCope manual	Uro	-	+1 / -0	bbcf.epfl	May 30, 2022
16	midgut	SCope manual	Jon44E Ag5r2 CG10477 mag Jon65Ai	-	+1 / -0	bbcf.epfl	May 30, 2022
44	? midgut ?	SCope manual	Diedel3 CG34026 AANATL3 CG3841 Alp10	-	+1 / -0	bbcf.epfl	May 30, 2022
31	? unknown ?	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
18	possible posterior midgut	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
19	? tip cell ? neurons?	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	hemocyte	SCope manual	zfh1 vkg Ppn Hml Pxn	-	+2 / -0	bbcf.epfl	May 30, 2022
16	oenocyte	SCope manual	FASN2 salm	-	+2 / -0	bbcf.epfl	May 30, 2022
16	fat body	SCope manual	CG17562 CG17560 FASN3 CG6660 FASN2	-	+1 / -2	bbcf.epfl	May 30, 2022
14	hindgut	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
21	visceral muscle	SCope manual	Mhc CG45076 Mf up bt	-	+3 / -0	bbcf.epfl	May 30, 2022
12	fat body	SCope manual	AkhR CG34166 apolpp CG6415 CG14990	-	+2 / -0	bbcf.epfl	May 30, 2022
11	tracheal system	SCope manual	ect vvl Nplp4 Gasp sano trh	-	+3 / -0	bbcf.epfl	May 30, 2022
0	adult Malpighian tubule bar-shaped cell of initial segment	SCope manual	tsh Doc1 Lkr Doc2	-	+2 / -0	bbcf.epfl	May 30, 2022
9	adult Malpighian tubule principal cell of lower ureter	SCope manual	Chs2	-	+1 / -0	bbcf.epfl	May 30, 2022
8	adult Malpighian tubule principal cell of lower segment	SCope manual	upd3 Alp4	-	+1 / -0	bbcf.epfl	May 30, 2022
19	salivary gland	SCope manual	sage sens 5-HT7 yellow-d 5-HT2A CG33109 LysP Sox21b pio	-	+1 / -0	bbcf.epfl	May 30, 2022
6	? salivary gland ?	SCope manual	sens 5-HT7 CG32198 alpha-Man-Ic yellow-d 5-HT2A LysP Sox21b	-	+1 / -2	bbcf.epfl	May 30, 2022
5	adult Malpighian tubule principal cell of transitional segment	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	adult Malpighian tubule principal cell of initial segment	SCope manual	Best2 CG16762	-	+2 / -0	bbcf.epfl	May 30, 2022
6	adult Malpighian tubule stellate cell of main segment	SCope manual	Drip tsh ClC-a Prip Lkr SecCl	-	+2 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell of main segment	SCope manual	CapaR Uro salt Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell	SCope manual	Irk1 CapaR Dh31-R Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
2	? Undefined / heterogeneous ?	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
12	adult renal stem cell	SCope manual	Sox21a Dl N esg	-	+2 / -0	bbcf.epfl	May 30, 2022
1	stem cell	SCope manual	E(spl)mbeta-HLH Sox21a Dl E(spl)m3-HLH N Df31 esg	-	+1 / -2	bbcf.epfl	May 30, 2022
0	adult Malpighian tubule principal cell of lower segment	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
tracheolar cell	tracheolar cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
somatic precursor cell	somatic precursor cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
oenocyte	oenocyte	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
muscle cell	muscle cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
gland	gland	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
fat cell	fat cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
excretory system	excretory system	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
epithelial cell	epithelial cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
20	unannotated	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
18	principal cell*	SCope manual	Uro	-	+1 / -0	bbcf.epfl	May 26, 2022
17	posterior midgut*	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
10	adult midgut*	SCope manual	Diedel3 CG34026 AANATL3 CG3841 Alp10	-	+1 / -0	bbcf.epfl	May 26, 2022
5	adult Malpighian tubule principal cell subtype	SCope manual	Irk1 Dh31-R wtrw	-	+1 / -0	bbcf.epfl	May 26, 2022
visceral muscle	visceral muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
principal cell*	principal cell*	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
posterior midgut*	posterior midgut*	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
artefact	artefact	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult tracheal cell	adult tracheal cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult midgut*	adult midgut*	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult hindgut*	adult hindgut*	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005735	FBbt:00005735	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003209	FBbt:00003209	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003185	FBbt:00003185	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00100317	FBbt:00100317	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00057011	FBbt:00057011	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00046052	FBbt:00046052	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007008	FBbt:00007008	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005063	FBbt:00005063	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005056	FBbt:00005056	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005048	FBbt:00005048	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004995	FBbt:00004995	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004864	FBbt:00004864	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00110862	FBbt:00110862	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049478	FBbt:00049478	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049477	FBbt:00049477	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049474	FBbt:00049474	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049472	FBbt:00049472	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00047102	FBbt:00047102	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005735	FBbt:00005735	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005070	FBbt:00005070	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003209	FBbt:00003209	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003185	FBbt:00003185	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003143	FBbt:00003143	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003135	FBbt:00003135	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00046052	FBbt:00046052	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007008	FBbt:00007008	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005056	FBbt:00005056	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005048	FBbt:00005048	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
15	? Crop or hindgut ?	SCope manual	scro dar1 CG15021	-	+1 / -0	bbcf.epfl	May 26, 2022
14	artefact	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
9	adult hindgut*	SCope manual	scro dar1 CG15021	-	+1 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Includes annotations from every project you can read that shares this cell set.

Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Malpighian tubule (10x, Relaxed) ASAP36 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details