[{"name":"cell_filtering/376147/output.loom","file_size":"94.7MB","run_name":"Cell filtering #2","run_attrs":"\u003cdiv class='flex flex-wrap gap-1.5 items-center'\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"manual_selection\" data-run-param-info-label-value=\"Manual selection\" data-run-param-info-description-value=\"Manual selection label\" data-run-param-info-value-value=\"/col_attrs/Cells to keep: kept=1\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eManual selection:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e/col_attrs/Cells to keep: kept=1\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"discarded_metadata_json\" data-run-param-info-label-value=\"Discarded metadata json\" data-run-param-info-description-value=\"Discarded metadata\" data-run-param-info-value-value=\"{\u0026quot;/col_attrs/Cells to keep\u0026quot;:{\u0026quot;type\u0026quot;:\u0026quot;unsel\u0026quot;,\u0026quot;vals\u0026quot;:[\u0026quot;1\u0026quot;]}}\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDiscarded metadata json:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e{\u0026quot;/col_attrs/Cells to keep\u0026quot;:{\u0026quot;type\u0026quot;:\u0026quot;unsel\u0026quot;,\u0026qu...\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"depth\" data-run-param-info-label-value=\"Depth\" data-run-param-info-description-value=\"Minimum depth\" data-run-param-info-value-value=\"1000\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDepth:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e1000\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"detected_genes\" data-run-param-info-label-value=\"Detected genes\" data-run-param-info-description-value=\"Minimum number of detected genes\" data-run-param-info-value-value=\"1000\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDetected genes:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e1000\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"protein_coding_content\" data-run-param-info-label-value=\"Protein coding content\" data-run-param-info-description-value=\"Minimum percentage of protein-coding genes\" data-run-param-info-value-value=\"80\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eProtein coding content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e80\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"mito_content\" data-run-param-info-label-value=\"Mito content\" data-run-param-info-description-value=\"Minimum percentage of mitochondrial genes\" data-run-param-info-value-value=\"20\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eMito content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e20\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"ribo_content\" data-run-param-info-label-value=\"Ribo content\" data-run-param-info-description-value=\"Minimum percentage of ribosomal genes\" data-run-param-info-value-value=\"40\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eRibo content:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e40\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"manually_discarded_cols\" data-run-param-info-label-value=\"Manually discarded cols\" data-run-param-info-description-value=\"Manually discarded cells\" data-run-param-info-value-value=\"3cdb7259bd466c09cbf2622c7630a201beacde9811382be3a21dfeff710d801c\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eManually discarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e3cdb7259bd466c09cbf2622c7630a201beacde9811382be3a21dfeff710d801c\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"nber_manually_discarded_cols\" data-run-param-info-label-value=\"Nber manually discarded cols\" data-run-param-info-description-value=\"Number of manually discarded cells\" data-run-param-info-value-value=\"265\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eNber manually discarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e265\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-purple-100 text-purple-700 border-purple-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"discarded_cols\" data-run-param-info-label-value=\"Discarded cols\" data-run-param-info-description-value=\"Discarded cells\" data-run-param-info-value-value=\"995a692aeb3f1e001032eb1282fdad56370c2daea43b6a7cc669e40a2ead80b5\"\u003e\u003cspan class='font-semibold text-purple-800'\u003eDiscarded cols:\u003c/span\u003e\u003cspan class='text-purple-600'\u003e995a692aeb3f1e001032eb1282fdad56370c2daea43b6a7cc669e40a2ead80b5\u003c/span\u003e\u003c/span\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-blue-100 text-blue-700 border-blue-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"input_matrix\" data-run-param-info-label-value=\"Input matrix\" data-run-param-info-description-value=\"\" data-run-param-info-value-value=\"/matrix\" data-run-param-info-pipeline-run-id-value=\"376145\" data-run-param-info-pipeline-url-value=\"/projects/2d1rq4/pipeline_runs\"\u003e\u003cspan class='font-semibold text-blue-800'\u003eInput matrix:\u003c/span\u003e\u003cspan class='text-blue-600'\u003ematrix\u003c/span\u003e\u003c/span\u003e\u003c/div\u003e","nber_cols":8846,"nber_rows":55416,"url":"https://asap.epfl.ch/projects/2d1rq4/get_file?filename=cell_filtering%2F376147%2Foutput.loom","url_h5ad":"https://asap.epfl.ch/projects/2d1rq4/get_file?filename=cell_filtering%2F376147%2Foutput.h5ad","content":[{"name":"/attrs/LOOM_SPEC_VERSION","nber_cols":1,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/col_attrs/Batch","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/CellID","nber_cols":8846,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/col_attrs/Cells to keep","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":false},{"name":"/col_attrs/CellType_genotype","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/Cluster_Genotype","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/_Depth","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Detected_Genes","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/Genotype","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/_Mitochondrial_Content","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Protein_Coding_Content","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/_Ribosomal_Content","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/col_attrs/Sample","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/_StableID","nber_cols":8846,"nber_rows":1,"data_type":"NUMERIC","imported":false},{"name":"/matrix","nber_cols":8846,"nber_rows":55416,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/Accession","nber_cols":1,"nber_rows":55416,"data_type":"STRING","imported":false},{"name":"/row_attrs/_Biotypes","nber_cols":1,"nber_rows":55416,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/_Chromosomes","nber_cols":1,"nber_rows":55416,"data_type":"DISCRETE","imported":false},{"name":"/row_attrs/Gene","nber_cols":1,"nber_rows":55416,"data_type":"STRING","imported":false},{"name":"/row_attrs/Original_Gene","nber_cols":1,"nber_rows":55416,"data_type":"STRING","imported":false},{"name":"/row_attrs/_StableID","nber_cols":1,"nber_rows":55416,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_Sum","nber_cols":1,"nber_rows":55416,"data_type":"NUMERIC","imported":false},{"name":"/row_attrs/_SumExonLength","nber_cols":1,"nber_rows":55416,"data_type":"NUMERIC","imported":false}]},{"name":"gene_filtering/376148/output.loom","file_size":"1012MB","run_name":"Normalization #1","run_attrs":"\u003cdiv class='flex flex-wrap gap-1.5 items-center'\u003e\u003cspan class='inline-flex items-center px-2 py-0.5 rounded text-xs font-medium border bg-blue-100 text-blue-700 border-blue-200 cursor-pointer' data-controller=\"run-param-info\" data-action=\"click-\u003erun-param-info#toggle\" data-run-param-info-name-value=\"input_matrix\" data-run-param-info-label-value=\"Input matrix\" data-run-param-info-description-value=\"\" data-run-param-info-value-value=\"/matrix\" data-run-param-info-pipeline-annot-id-value=\"3142572\" data-run-param-info-pipeline-run-id-value=\"376148\" data-run-param-info-pipeline-url-value=\"/projects/2d1rq4/pipeline_runs\"\u003e\u003cspan class='font-semibold text-blue-800'\u003eInput matrix:\u003c/span\u003e\u003cspan class='text-blue-600'\u003ematrix\u003c/span\u003e\u003c/span\u003e\u003c/div\u003e","nber_cols":8846,"nber_rows":22106,"url":"https://asap.epfl.ch/projects/2d1rq4/get_file?filename=gene_filtering%2F376148%2Foutput.loom","url_h5ad":"https://asap.epfl.ch/projects/2d1rq4/get_file?filename=gene_filtering%2F376148%2Foutput.h5ad","content":[{"name":"/attrs/LOOM_SPEC_VERSION","nber_cols":1,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/col_attrs/Batch","nber_cols":8846,"nber_rows":1,"data_type":"DISCRETE","imported":true},{"name":"/col_attrs/CellID","nber_cols":8846,"nber_rows":1,"data_type":"STRING","imported":false},{"name":"/col_attrs/Cells to 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