[FCA] Testis (10x, Relaxed)

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Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

0t47gk

Project Name

[FCA] Testis (10x, Relaxed)

TypeUnknown

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedApr 30, 2026

Reproducibility

Instructions List of commands

Input file

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
36	spermatogonium	SCope manual	nos stg esg	-	+1 / -0	bbcf.epfl	May 30, 2022
25	spermatocyte	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
22	pigment cell	SCope manual	Sox100B ems	-	+2 / -0	bbcf.epfl	May 30, 2022
21	muscle cell	SCope manual	tn nord Mhc Abd-B Prm sls	-	+2 / -0	bbcf.epfl	May 30, 2022
19	mid-late elongation-stage spermatid	SCope manual	p-cup soti orb c-cup whip	-	+3 / -0	bbcf.epfl	May 30, 2022
12	head cyst cell	SCope manual	MtnA CG18628 abd-A Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
10	early-mid elongation-stage spermatid	SCope manual	sunz whip	-	+2 / -0	bbcf.epfl	May 30, 2022
9	early elongation stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult tracheocyte	SCope manual	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 30, 2022
1	adult neuron	SCope manual	para mmd	-	+1 / -0	bbcf.epfl	May 30, 2022
0	adult fat body	SCope manual	Lsp2 Fbp1 Fbp2	-	+2 / -0	bbcf.epfl	May 30, 2022
43	spermatocyte 4b	SCope manual	CycB	-	+1 / -0	bbcf.epfl	May 30, 2022
24	spermatogonium-spermatocyte transition	SCope manual	bam stg vas Rbp4	-	+1 / -0	bbcf.epfl	May 30, 2022
103	neuron	SCope manual	para mmd	-	+1 / -0	bbcf.epfl	May 30, 2022
102	spermatogonium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
99	fat body	SCope manual	Lsp2	-	+1 / -0	bbcf.epfl	May 30, 2022
97	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
87	fat body	SCope manual	Fbp1 Fbp2	-	+1 / -0	bbcf.epfl	May 30, 2022
78	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
78	spermatocyte 1b	SCope manual	-	-	+0 / -1	bbcf.epfl	May 30, 2022
73	spermatocyte	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
64	spermatocyte	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
58	early cyst cells 2	SCope manual	eya zfh1 so tj esg	-	+5 / -0	bbcf.epfl	May 30, 2022
56	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
56	spermatocyte 7b	SCope manual	-	-	+1 / -1	bbcf.epfl	May 30, 2022
54	pigment cell	SCope manual	Sox100B	-	+1 / -0	bbcf.epfl	May 30, 2022
51	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
48	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
46	mid-late elongation-stage spermatid	SCope manual	p-cup orb whip	-	+1 / -0	bbcf.epfl	May 30, 2022
45	spermatocyte	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
41	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
40	spermatocyte	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
40	spermatocyte 1a	SCope manual	dany kmg Rbp4	-	+0 / -1	bbcf.epfl	May 30, 2022
39	late primary spermatocytes	SCope manual	kl-5 kl-2 kl-3	-	+1 / -0	bbcf.epfl	May 30, 2022
37	mid-late elongation-stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
36	early cyst cell	SCope manual	ogre zfh1 tj	-	+1 / -0	bbcf.epfl	May 30, 2022
35	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
33	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
24	spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
30	Late primary spermatocyte	SCope manual	-	-	+0 / -1	bbcf.epfl	May 30, 2022
25	spermatogonium	SCope manual	nos stg esg	-	+1 / -0	bbcf.epfl	May 30, 2022
25	early spermatogonium	SCope manual	nos stg esg	-	+1 / -1	bbcf.epfl	May 30, 2022
22	spermatogonium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
22	mid-to-late spermatogonia	SCope manual	-	-	+0 / -1	bbcf.epfl	May 30, 2022
10	mid-late elongation-stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	spermatocyte	SCope manual	vas Rbp4	-	+1 / -0	bbcf.epfl	May 30, 2022
4	early-mid elongation-stage spermatid	SCope manual	sunz whip	-	+1 / -0	bbcf.epfl	May 30, 2022
0	early elongation stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	maturing primary spermatocyte	SCope manual	CycB aly CG3927	-	+1 / -0	bbcf.epfl	May 30, 2022
29	pigment cell	SCope manual	Sox100B ems	-	+1 / -0	bbcf.epfl	May 30, 2022
10	terminal epithelial cell of testis	SCope manual	MtnA CG18628 abd-A Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
30	muscle cell	SCope manual	Mhc Prm sls	-	+1 / -0	bbcf.epfl	May 30, 2022
9	mid-late elongation-stage spermatid	SCope manual	p-cup soti c-cup	-	+1 / -0	bbcf.epfl	May 30, 2022
2	muscle cell 3	SCope manual	tn nord Mhc Abd-B	-	+2 / -0	bbcf.epfl	May 30, 2022
23	late cyst cell a	SCope manual	Ubx so	-	+1 / -2	bbcf.epfl	May 30, 2022
11	germinal proliferation center hub	SCope manual	upd1 CadN ptc hh Socs36E magu Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
21	Male gonad associated epithelium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
19	late cyst cells b	SCope manual	-	-	+1 / -2	bbcf.epfl	May 30, 2022
17	Cyst cell branch b	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	muscle cell	SCope manual	Mhc up	-	+1 / -0	bbcf.epfl	May 30, 2022
14	cyst cell branch a	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
13	hemocyte	SCope manual	Ppn pnr Hml	-	+1 / -0	bbcf.epfl	May 30, 2022
12	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
11	Male gonad associated epithelium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
9	Male gonad associated epithelium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
7	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
6	mid-late elongation-stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	Male gonad associated epithelium	SCope manual	-	-	+2 / -0	bbcf.epfl	May 30, 2022
5	spermatocyte 0	SCope manual	-	-	+0 / -2	bbcf.epfl	May 30, 2022
3	germarium	SCope manual	AGO3	-	+1 / -2	bbcf.epfl	May 30, 2022
2	spermatocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
1	Male gonad associated epithelium	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
0	early-mid elongation-stage spermatid	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
37	spermatogonium-spermatocyte transition	SCope manual	bam stg vas Rbp4	-	+1 / -0	bbcf.epfl	May 26, 2022
35	spermatocyte cyst cell branch b	SCope manual	Gyg eya Gs2	-	+2 / -0	bbcf.epfl	May 26, 2022
34	spermatocyte cyst cell branch a	SCope manual	eya rdo	-	+2 / -0	bbcf.epfl	May 26, 2022
33	spermatocyte 7a	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
32	spermatocyte 6	SCope manual	CycB	-	+7 / -0	bbcf.epfl	May 26, 2022
31	spermatocyte 5	SCope manual	CycB kl-3	-	+7 / -0	bbcf.epfl	May 26, 2022
30	spermatocyte 4	SCope manual	Rbp4	-	+7 / -0	bbcf.epfl	May 26, 2022
29	spermatocyte 3	SCope manual	Rbp4	-	+6 / -0	bbcf.epfl	May 26, 2022
28	spermatocyte 2	SCope manual	-	-	+6 / -1	bbcf.epfl	May 26, 2022
27	spermatocyte 1	SCope manual	bam Rbp4	-	+8 / -0	bbcf.epfl	May 26, 2022
26	spermatocyte 0	SCope manual	-	-	+6 / -0	bbcf.epfl	May 26, 2022
23	secretory cell of the male reproductive tract	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
20	mid-late proliferating spermatogonia	SCope manual	bam nos stai	-	+1 / -0	bbcf.epfl	May 26, 2022
18	maturing primary spermatocyte	SCope manual	CycB aly CG3927	-	+1 / -0	bbcf.epfl	May 26, 2022
16	late primary spermatocyte	SCope manual	kl-5 kl-2 kl-3	-	+1 / -0	bbcf.epfl	May 26, 2022
8	early cyst cell 2	SCope manual	eya zfh1 so tj esg	-	+5 / -0	bbcf.epfl	May 26, 2022
7	early cyst cell 1	SCope manual	N zfh1 piwi tj	-	+4 / -2	bbcf.epfl	May 26, 2022
4	cyst cell branch b	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
20	trachea 2	SCope manual	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 26, 2022
22	trachea 1	SCope manual	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 26, 2022
59	muscle cell 2	SCope manual	Mhc	-	+2 / -0	bbcf.epfl	May 26, 2022
46	muscle cell 1	SCope manual	Mhc	-	+2 / -0	bbcf.epfl	May 26, 2022
36	early cyst cells	SCope manual	N zfh1 piwi tj	-	+4 / -2	bbcf.epfl	May 26, 2022
16	Late cyst cell branch b	SCope manual	-	-	+2 / -0	bbcf.epfl	May 26, 2022
19	Late cyst cell branch a	SCope manual	-	-	+3 / -0	bbcf.epfl	May 26, 2022
8	Cyst cell intermediate	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
91	secretory cells of the male reproductive tract	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
17	male gonad associated epithelium	SCope manual	-	-	+2 / -0	bbcf.epfl	May 26, 2022
15	late cyst cell branch b	SCope manual	-	-	+2 / -0	bbcf.epfl	May 26, 2022
14	late cyst cell branch a	SCope manual	-	-	+3 / -0	bbcf.epfl	May 26, 2022
6	cyst stem cell	SCope manual	zfh1 stg tj esg	-	+2 / -0	bbcf.epfl	May 26, 2022
5	cyst cell intermediate	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
3	cyst cell branch a	SCope manual	-	-	+1 / -0	bbcf.epfl	May 26, 2022
77	Spermatocyte Cyst Cell B	SCope manual	Gyg eya Gs2	-	+2 / -0	bbcf.epfl	May 26, 2022
47	Spermatocyte Cyst Cell A	SCope manual	eya rdo	-	+2 / -0	bbcf.epfl	May 26, 2022

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Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Testis (10x, Relaxed) ASAP24 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details